Knomics-Biota - A system for exploratory analysis of human gut microbiota data

Daria Efimova, Alexander Tyakht, Anna Popenko, Anatoly Vasilyev, Ilya Altukhov, Nikita Dovidchenko, Vera Odintsova, Natalya Klimenko, Robert Loshkarev, Maria Pashkova, Anna Elizarova, Viktoriya Voroshilova, Sergei Slavskii, Yury Pekov, Ekaterina Filippova, Tatiana Shashkova, Evgenii Levin, Dmitry Alexeev

Результат исследования: Научные публикации в периодических изданияхстатья

8 Цитирования (Scopus)

Аннотация

Background: Metagenomic surveys of human microbiota are becoming increasingly widespread in academic research as well as in food and pharmaceutical industries and clinical context. Intuitive tools for investigating experimental data are of high interest to researchers. Results: Knomics-Biota is a web-based resource for exploratory analysis of human gut metagenomes. Users can generate and share analytical reports corresponding to common experimental schemes (like case-control study or paired comparison). Interactive visualizations and statistical analysis are provided in association with the external factors and in the context of thousands of publicly available datasets arranged into thematic collections. The web-service is available at https://biota.knomics.ru. Conclusions: Knomics-Biota web service is a comprehensive tool for interactive metagenomic data analysis.

Язык оригиналаанглийский
Номер статьи25
Страницы (с-по)25
Число страниц7
ЖурналBioData Mining
Том11
Номер выпуска1
DOI
СостояниеОпубликовано - 6 ноя 2018

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    Efimova, D., Tyakht, A., Popenko, A., Vasilyev, A., Altukhov, I., Dovidchenko, N., Odintsova, V., Klimenko, N., Loshkarev, R., Pashkova, M., Elizarova, A., Voroshilova, V., Slavskii, S., Pekov, Y., Filippova, E., Shashkova, T., Levin, E., & Alexeev, D. (2018). Knomics-Biota - A system for exploratory analysis of human gut microbiota data. BioData Mining, 11(1), 25. [25]. https://doi.org/10.1186/s13040-018-0187-3