Interdisciplinary Center for Advanced Biomedical Research "Living Systems Design"

Research output

Research output per year 2011 2017 2018 2019 2020 2021 2023

• 293 Article
• 47 Review article
• 44 Meeting Abstract
• 30 Abstract
• 53 More
  • 23 Chapter
  • 10 Patent
  • 4 Book
  • 3 Conference contribution
  • 3 Conference article
  • 3 Know-how
  • 2 Chapter (peer-reviewed)
  • 1 Teaching materials
  • 1 Foreword/postscript
  • 1 Comment/debate
  • 1 Editorial
  • 1 Letter

Research output per year

Research output per year

Search results

• 2017

  Bioselection of coxsackievirus B6 strain variants with altered tropism to human cancer cell lines

  Svyatchenko, V. A., Ternovoy, V. A., Kiselev, N. N., Demina, A. V., Loktev, V. B., Netesov, S. V. & Chumakov, P. M., 1 Nov 2017, In: Archives of Virology. 162, 11, p. 3355-3362 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Tropism 100%
  • Enterovirus 95%
  • Cell Line 49%
  • MCF-7 Cells 35%
  • Neoplasms 26%
  6 Citations (Scopus)

• Catalase activity of IgG antibodies from the sera of healthy donors and patients with schizophrenia

  Ermakov, E. A., Smirnova, L. P., Bokhan, N. A., Semke, A. V., Ivanova, S. A., Buneva, V. N. & Nevinsky, G. A., 1 Sep 2017, In: PLoS ONE. 12, 9, p. e0183867 25 p., e0183867.

  Research output: Contribution to journal › Article › peer-review

  • schizophrenia 100%
  • Catalase 69%
  • Schizophrenia 58%
  • catalase 57%
  • Tissue Donors 56%
  7 Citations (Scopus)

• Cellular models, genomic technologies and clinical practice: A synthesis of knowledge for the study of the mechanisms, diagnostics and treatment of Parkinson's disease

  Kovalenko, V. R., Khabarova, E. A., Rzaev, D. A. & Medvedev, S. P., 2017, In: Genes and Cells. 12, 2, p. 11-28 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Genomics 100%
  • Cell Biology 83%
  • Parkinson Disease 80%
  • Molecular Biology 78%
  • Cytology 69%
  3 Citations (Scopus)

• Change in Oncolytic Activity of Sendai Virus during Adaptation to Cell Cultures

  Zainutdinov, S. S., Grazhdantseva, A. A., Kochetkov, D. V., Chumakov, P. M., Netesov, S. V., Matveeva, O. V. & Kochneva, G. V., 1 Oct 2017, In: Molecular Genetics, Microbiology and Virology. 32, 4, p. 212-217 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Sendai virus 100%
  • Cell Culture Techniques 56%
  • Oncolytic Viruses 51%
  • Chick Embryo 43%
  • Mutation Accumulation 34%
  2 Citations (Scopus)

• Changes in haematopoietic progenitor colony differentiation and proliferation and the production of different abzymes in EAE mice treated with DNA

  Aulova, K. S., Toporkova, L. B., Lopatnikova, J. A., Alshevskaya, A. A., Sennikov, S. V., Buneva, V. N., Budde, T., Meuth, S. G., Popova, N. A., Orlovskaya, I. A. & Nevinsky, G. A., 1 Dec 2017, In: Journal of Cellular and Molecular Medicine. 21, 12, p. 3795-3809 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Autoimmune Experimental Encephalomyelitis 100%
  • Immunization 63%
  • DNA 47%
  • Inbred C57BL Mouse 26%
  • Deoxyribonucleases 23%
  14 Citations (Scopus)

• Conformational dynamics of human dioxygenase ABH2 in the course of action on methylated DNA

  Iakovlev, D. A., Timofeyeva, N. A., Kuznetsov, N. A. & Fedorova, O. S., Sep 2017, In: FEBS Journal. 284, p. 109-110 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Correlated target search by uracil-DNA glycosylase in the presence of bulky adducts and DNA-binding ligands

  Mechetin, G. V., Dyatlova, E. A., Sinyakov, A. N., Ryabinin, V. A., Vorobjev, P. E. & Zharkov, D. O., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 23-28 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Uracil-DNA Glycosidase 100%
  • DNA Adducts 80%
  • Fluorescein 68%
  • Adduct 46%
  • Ligands 45%
  1 Citation (Scopus)

• Development of a stable eukaryotic strain producing fully human monoclonal antibody on the basis of the human antibody against ectromelia virus

  Matveev, A. L., Khlusevich, Y. A., Baykov, I. K., Babkin, I. V., Goncharova, E. P., Morozova, V. V. & Tikunova, N. V., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 8, p. 993-1000 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Ectromelia virus 100%
  • monoclonal antibodies 50%
  • Monoclonal Antibodies 41%
  • Strain 39%
  • antibodies 37%
  2 Citations (Scopus)

• Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

  Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Stellate Crystal 100%
  • Dihydroartemisinin 96%
  • dihydroartemisinin 91%
  • Portal Hypertension 68%
  • obeticholic acid 23%
  14 Citations (Scopus)

• DNA Deformation-Coupled Recognition of 8-Oxoguanine: Conformational Kinetic Gating in Human DNA Glycosylase

  Li, H., Endutkin, A. V., Bergonzo, C., Fu, L., Grollman, A., Zharkov, D. O. & Simmerling, C., 22 Feb 2017, In: Journal of the American Chemical Society. 139, 7, p. 2682-2692 11 p.

  Research output: Contribution to journal › Article › peer-review

  • 8-Oxoguanine 100%
  • DNA Glycosylases 94%
  • 8-hydroxyguanine 94%
  • DNA 66%
  • Guanine 62%
  18 Citations (Scopus)

• DNA repair in transcription intermediates by helix-two-turn-helix family DNA glycosylases

  Makasheva, K. & Zharkov, D., Sep 2017, In: FEBS Journal. 284, p. 114-114 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Dynamic recognition in protein-DNA complexes

  Simmerling, C., Grollman, A. & Zharkov, D., 20 Aug 2017, In: Abstracts of papers of the american chemical society. 254, 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Effect of downstream enzymes of base excision DNA repair pathway on the action of human DNA glycosylase MBD4

  Kladova, O., Iakovlev, D., Kuznetsov, N. & Fedorova, O., Sep 2017, In: FEBS Journal. 284, p. 112-112 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Effects of brain reninangiotensin system inhibition in ISIAH rats with inherited stress-induced arterial hypertension

  Klimov, L. O., Ryazanova, M. A., Fedoseeva, L. A. & Markel, A. L., 2017, In: Вавиловский журнал генетики и селекции. 21, 6, p. 735-741 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • renin-angiotensin system 100%
  • hypertension 77%
  • Renin-Angiotensin System 74%
  • brain 50%
  • Hypertension 46%
  2 Citations (Scopus)

• Endothelial and smooth muscle cells derived from human cardiac explants demonstrate angiogenic potential and suitable for design of cell-containing vascular grafts

  Zakharova, I. S., Zhiven', M. K., Saaya, S. B., Shevchenko, A. I., Smirnova, A. M., Strunov, A., Karpenko, A. A., Pokushalov, E. A., Ivanova, L. N., Makarevich, P. I., Parfyonova, Y. V., Aboian, E. & Zakian, S. M., 3 Mar 2017, In: Journal of Translational Medicine. 15, 1, p. 54 18 p., 54.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Angiogenic 100%
  • Smooth Muscle Myocytes 60%
  • Transplants 42%
  • Blood Vessels 40%
  • Capillary Crystal 39%
  12 Citations (Scopus)

• Enzyme processivity as a drug target: The case of poxvirus uracil-DNA glycosylase

  Zharkov, D., Sep 2017, In: FEBS Journal. 284, p. 11-11 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Evolution of inhibitor-resistant natural mutant forms of HIV-1 protease probed by pre-steady state kinetic analysis

  Zakharova, M. Y., Kuznetsova, A. A., Kaliberda, E. N., Dronina, M. A., Kolesnikov, A. V., Kozyr, A. V., Smirnov, I. V., Rumsh, L. D., Fedorova, O. S., Knorre, D. G., Gabibov, A. G. & Kuznetsov, N. A., 1 Nov 2017, In: Biochimie. 142, p. 125-134 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Human immunodeficiency virus 1 p16 protease 100%
  • Kinetics Type 61%
  • Darunavir 55%
  • Kinetics 48%
  • Resistance 42%

• Expression pattern and alternative splicing of HTT gene in human tissues

  Malakhova, A. A. & Elisaphenko, E. A., 1 Jan 2017, In: Genes and Cells. 12, 4, p. 26-32 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Alternative Splicing 100%
  • Genes 87%
  • Tissue 77%
  • Neurons 63%
  • Huntington Disease 51%

• Genome Stability Maintenance in Naked aMole-Rat

  Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., 2017, In: Acta Naturae. 9, 4, p. 31-41 11 p., 4.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • amole 100%
  • Mole Rats 72%
  • Genomic Instability 48%
  • Maintenance 30%
  • Resistance 27%

• Genome stability maintenance in naked mole-rat

  Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., 2017, In: Acta Naturae. 9, 4, p. 31-41 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Mole Rats 100%
  • Genomic Instability 66%
  • Maintenance 42%
  • Resistance 37%
  • Longevity 20%
  13 Citations (Scopus)

• Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells

  Sherstyuk, V. V., Medvedev, S. P., Elisaphenko, E. A., Vaskova, E. A., Ri, M. T., Vyatkin, Y. V., Saik, O. V., Shtokalo, D. N., Pokushalov, E. A. & Zakian, S. M., 5 Jun 2017, In: Scientific Reports. 7, 1, p. 2787 12 p., 2787.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pluripotent Stem Cells 100%
  • MicroRNAs 72%
  • Genome 58%
  • Computational Biology 17%
  • Small Untranslated RNA 11%
  11 Citations (Scopus)

• Global DNA dynamics of 8-oxoguanine repair by human OGG1 revealed by stopped-flow kinetics and molecular dynamics simulation

  Lukina, M. V., Koval, V. V., Lomzov, A. A., Zharkov, D. O. & Fedorova, O. S., 1 Oct 2017, In: Molecular BioSystems. 13, 10, p. 1954-1966 13 p.

  Research output: Contribution to journal › Article › peer-review

  • 8-hydroxyguanine 100%
  • Molecular Dynamics Simulation 76%
  • Kinetics 49%
  • DNA 38%
  • Amino Acids 27%
  7 Citations (Scopus)

• Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s

  Manuylov, V. A., Chub, E. V., Kichatova, V. S., Soboleva, N. V., Isaeva, O. V., Zamyatnin, A. A. & Netesov, S. V., 1 Aug 2017, In: Journal of General Virology. 98, 8, p. 2079-2087 9 p., 000878.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • USSR 100%
  • Hepacivirus 69%
  • Tajikistan 31%
  • Uzbekistan 30%
  • Azerbaijan 28%
  1 Citation (Scopus)

• How human IgGs against myelin basic protein (MBP) recognize oligopeptides and MBP

  Belov, S., Buneva, V. N. & Nevinsky, G. A., 1 Oct 2017, In: Journal of Molecular Recognition. 30, 10, 12 p., 2637.

  Research output: Contribution to journal › Article › peer-review

  • Oligopeptides 100%
  • Myelin Basic Protein 88%
  • Light 51%
  • Amino Acids 25%
  • Multiple Sclerosis 21%
  3 Citations (Scopus)

• Huntington's disease modeling on HEK293 cell line

  Sharipova, D. V., Malankhanova, T. B. & Malakhova, A. A., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 7, p. 856-861 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Huntington Disease 100%
  • HEK293 Cells 97%
  • Mutation 76%
  • cell lines 66%
  • mutation 61%
  1 Citation (Scopus)

• Immunogenicity of recombinant analog of antitumor protein lactaptin

  Tkachenko, A. V., Troitskaya, O. S., Semenov, D. V., Dmitrienko, E. V., Kuligina, E. V., Richter, V. A. & Koval, O. A., 9 Nov 2017, In: Molekuliarnaia biologiia. 51, 5, p. 787-796 10 p.

  Research output: Contribution to journal › Article › peer-review

  • NF-kappa B 100%
  • Recombinant Proteins 92%
  • Cytokines 87%
  • Inhibitor of Apoptosis Proteins 64%
  • Macrophage Inflammatory Proteins 62%

• Impact of delivery method on antiviral activity of phosphodiester, phosphorothioate, and phosphoryl guanidine oligonucleotides in MDCK cells infected with H5N1 bird flu virus

  Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molecular Biology. 51, 4, p. 633-638 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Guanidine 100%
  • Madin Darby Canine Kidney Cells 96%
  • Nanocomposites 91%
  • Birds 83%
  • Oligonucleotides 81%
  1 Citation (Scopus)

• Impact of Delivery Method on Antiviral Activity of Phosphodiester, Phosphorothioate, and Phosphoryl Guanidine Oligonucleotides in MDCK Cells Infected with H5N1 Bird Flu Virus

  Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molekuliarnaia biologiia. 51, 4, p. 717-723 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Guanidine 100%
  • Madin Darby Canine Kidney Cells 96%
  • Nanocomposites 91%
  • Birds 83%
  • Oligonucleotides 81%

• Implementation of objective PASC-derived taxon demarcation criteria for official classification of filoviruses

  Bào, Y., Amarasinghe, G. K., Basler, C. F., Bavari, S., Bukreyev, A., Chandran, K., Dolnik, O., Dye, J. M., Ebihara, H., Formenty, P., Hewson, R., Kobinger, G. P., Leroy, E. M., Mühlberger, E., Netesov, S. V., Patterson, J. L., Paweska, J. T., Smither, S. J., Takada, A., Towner, J. S., & 3 othersVolchkov, V. E., Wahl-Jensen, V. & Kuhn, J. H., 11 May 2017, In: Viruses. 9, 5, 7 p., 106.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Filoviridae 100%
  • Genome 17%
  • Software Design 9%
  • Information Centers 8%
  • Nucleic Acid Databases 7%
  10 Citations (Scopus)

• Influence of pyridine-like ligands on the structure, photochemical and biological properties of nitro-nitrosyl ruthenium complexes

  Kostin, G. A., Mikhailov, A. A., Kuratieva, N. V., Pischur, D. P., Zharkov, D. O. & Grin, I. R., 7 Aug 2017, In: New Journal of Chemistry. 41, 15, p. 7758-7765 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Pyridine 100%
  • Ruthenium 91%
  • Ligands 80%
  • Biological Property 59%
  • Cells 59%
  19 Citations (Scopus)

• Inhibitors of nuclease and redox activity of apurinic/apyrimidinic endonuclease 1/redox effector factor 1 (APE1/Ref-1)

  Laev, S. S., Salakhutdinov, N. F. & Lavrik, O. I., 1 May 2017, In: Bioorganic and Medicinal Chemistry. 25, 9, p. 2531-2544 14 p.

  Research output: Contribution to journal › Review article › peer-review

  • DNA-(Apurinic or Apyrimidinic Site) Lyase 100%
  • Effector 73%
  • Oxidation-Reduction 64%
  • Endonucleases 50%
  • 5-Deoxyribose Phosphate 20%
  25 Citations (Scopus)

• Interaction features of adenine DNA glycosylase MutY from E. coli with DNA substrates

  Tyugashev, T. E., Kuznetsova, A. A., Kuznetsov, N. A. & Fedorova, O. S., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 13-22 10 p.

  Research output: Contribution to journal › Article › peer-review

  • adenine glycosylase 100%
  • DNA Adenine 86%
  • DNA Glycosylases 74%
  • Tryptophan Residue 56%
  • Fluorescein 54%
  2 Citations (Scopus)

• Modern Genome Editing Technologies in Huntington's Disease Research

  Malankhanova, T. B., Malakhova, A. A., Medvedev, S. P. & Zakian, S. M., 2017, In: Journal of Huntington's disease. 6, 1, p. 19-31 13 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Gene Editing 100%
  • Huntington Disease 90%
  • Technology 53%
  • Transcription Activator-Like Effector Nucleases 30%
  • Clustered Regularly Interspaced Short Palindromic Repeats 23%
  15 Citations (Scopus)

• Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

  Popov, A. V., Endutkin, A. V., Vorobjev, Y. N. & Zharkov, D. O., 8 May 2017, In: BMC Structural Biology. 17, 1, p. 1-19 19 p., 5.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • DNA-Formamidopyrimidine Glycosylase 100%
  • Molecular Dynamics Simulation 65%
  • Catalytic Domain 52%
  • DNA 32%
  • Nucleotides 20%
  6 Citations (Scopus)

• Mutational and kinetic analysis of lesion recognition by Escherichia coli endonuclease VIII

  Kladova, O. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 13 May 2017, In: Genes. 8, 5, 13 p., 140.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deoxyribonuclease (Pyrimidine Dimer) 100%
  • Kinetics 40%
  • Escherichia coli 39%
  • Catalytic DNA 33%
  • Phosphates 19%
  11 Citations (Scopus)

• Neural response to catecholamine depletion in remitted bulimia nervosa: Relation to depression and relapse

  Ermakov, E., Smirnova, L., Ivanova, S., Zaharova, O., Buneva, V. & Nevinsky, G., 1 Jul 2017, In: European Neuropsychopharmacology. 27, 7, p. 633-646 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bulimia Nervosa 100%
  • Cerebrovascular Circulation 76%
  • Catecholamines 74%
  • Depression 52%
  • Recurrence 45%
  5 Citations (Scopus)

• Nuclear delivery of oligonucleotides via nanocomposites based on TiO₂ nanoparticles and polylysine

  Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 1 Sep 2017, In: Molecular Biology. 51, 5, p. 695-704 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Polylysine 100%
  • Nanocomposites 91%
  • Oligonucleotides 71%
  • Nanoparticles 60%
  • Interphase 39%
  1 Citation (Scopus)

• Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

  Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 9 Nov 2017, In: Molekuliarnaia biologiia. 51, 5, p. 797-808 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Polylysine 100%
  • Nanocomposites 91%
  • Oligonucleotides 71%
  • Nanoparticles 60%
  • Interphase 39%

• Possibility and challenges of conversion of current virus species names to Linnaean binomials

  Postler, T. S., Clawson, A. N., Amarasinghe, G. K., Basler, C. F., Bavari, S., Benko, M., Blasdell, K. R., Briese, T., Buchmeier, M. J., Bukreyev, A., Calisher, C. H., Chandran, K., Charrel, R., Clegg, C. S., Collins, P. L., De La Torre, J. C., DeRisi, J. L., Dietzgen, R. G., Dolnik, O., Dürrwald, R., & 52 othersDye, J. M., Easton, A. J., Emonet, S., Formenty, P., Fouchier, R. A. M., Ghedin, E., Gonzalez, J. P., Harrach, B., Hewson, R., Horie, M., Jiāng, D., Kobinger, G., Kondo, H., Kropinski, A. M., Krupovic, M., Kurath, G., Lamb, R. A., Leroy, E. M., Lukashevich, I. S., Maisner, A., Mushegian, A. R., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Peters, C. J., Radoshitzky, S. R., Rima, B. K., Romanowski, V., Rubbenstroth, D., Sabanadzovic, S., Sanfaçon, H., Salvato, M. S., Schwemmle, M., Smither, S. J., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Volchkov, V. E., Wahl-Jensen, V., Walker, P. J., Wang, L. F., Varsani, A., Whitfield, A. E., Murilo Zerbini, F. & Kuhn, J. H., 1 May 2017, In: Systematic Biology. 66, 3, p. 463-473 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • virus 100%
  • Names 97%
  • Mononegavirales 91%
  • Arenaviridae 83%
  • Viruses 68%
  12 Citations (Scopus)

• Pre-steady-state kinetic analysis of damage recognition by human single-strand selective monofunctional uracil-DNA glycosylase SMUG1

  Kuznetsova, A. A., Iakovlev, D. A., Misovets, I. V., Ishchenko, A. A., Saparbaev, M. K., Kuznetsov, N. A. & Fedorova, O. S., 21 Nov 2017, In: Molecular BioSystems. 13, 12, p. 2638-2649 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • human SMUG1 protein 100%
  • Kinetics 29%
  • 5-formyluridine 25%
  • Uridine 24%
  • 5-hydroxymethyluridine 24%
  14 Citations (Scopus)

• Pre-steady state kinetics of DNA binding and abasic site hydrolysis by tyrosyl-DNA phosphodiesterase 1

  Kuznetsov, N. A., Lebedeva, N. A., Kuznetsova, A. A., Rechkunova, N. I., Dyrkheeva, N. S., Kupryushkin, M. S., Stetsenko, D. A., Pyshnyi, D. V., Fedorova, O. S. & Lavrik, O. I., 18 Aug 2017, In: Journal of Biomolecular Structure and Dynamics. 35, 11, p. 2314-2327 14 p.

  Research output: Contribution to journal › Article › peer-review

  • tyrosyl-DNA phosphodiesterase 100%
  • Hydrolysis 51%
  • N-Glycosyl Hydrolases 45%
  • Binding Sites 42%
  • Kinetics 39%
  4 Citations (Scopus)

• Processing of the abasic sites clustered with the benzo[a]pyrene adducts by the base excision repair enzymes

  Starostenko, L. V., Rechkunova, N. I., Lebedeva, N. A., Lomzov, A. A., Koval, V. V. & Lavrik, O. I., 1 Feb 2017, In: DNA Repair. 50, p. 43-53 11 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-(Apurinic or Apyrimidinic Site) Lyase 100%
  • Benzo(a)pyrene 82%
  • Benzo[a]pyrene 76%
  • DNA Repair 62%
  • Nucleotide 55%
  2 Citations (Scopus)

• Production, purification of the recombinant analog of y-box-binding protein 1 and its interaction with poly(ADP-ribose), RNA, single- and double-stranded DNAs

  Alemasova, E. E., Naumenko, K. N., Pestryakov, P. E. & Lavrik, O. I., 2017, In: Biopolymers and Cell. 33, 3, p. 214-220 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Poly Adenosine Diphosphate Ribose 100%
  • Poly(ADPribose) 96%
  • Single-Stranded DNA 85%
  • Double-Stranded DNA 75%
  • Carrier Proteins 60%
  2 Citations (Scopus)

• Purified horse milk exosomes contain an unpredictable small number of major proteins

  Sedykh, S. E., Purvinish, L. V., Monogarov, A. S., Burkova, E. E., Grigor'eva, A. E., Bulgakov, D. V., Dmitrenok, P. S., Vlassov, V. V., Ryabchikova, E. I. & Nevinsky, G. A., 1 Jun 2017, In: Biochimie Open. 4, p. 61-72 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Exosomes 100%
  • Horses 80%
  • Milk 79%
  • Protein 35%
  • Proteins 31%
  19 Citations (Scopus)

• Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit

  Grosheva, A. S., Zharkov, D. O., Stahl, J., Gopanenko, A. V., Tupikin, A. E., Kabilov, M. R., Graifer, D. M. & Karpova, G. G., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3833-3843 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Ribosomal Proteins 100%
  • Single-Stranded DNA 96%
  • Ribosomes 82%
  • DNA-(Apurinic or Apyrimidinic Site) Lyase 47%
  • DNA Repair 44%
  7 Citations (Scopus)

• Role of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) in DNA repair

  Kosova, A. A., Khodyreva, S. N. & Lavrik, O. I., 1 Jun 2017, In: Biochemistry (Moscow). 82, 6, p. 643-654 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Glyceraldehyde 3-Phosphate 100%
  • Glyceraldehyde-3-Phosphate Dehydrogenases 98%
  • DNA Repair 70%
  • HMGB2 Protein 19%
  • Uracil-DNA Glycosidase 16%
  37 Citations (Scopus)

• Search for Modified DNA Sites with the Human Methyl-CpG-Binding Enzyme MBD4

  Yakovlev, D. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 2017, In: Acta Naturae. 9, 1, p. 26-37 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nucleotide 100%
  • Demethylation 72%
  • DNA 67%
  • Tryptophan Residue 67%
  • Enzymes 66%
  13 Citations (Scopus)

• Solid/gas biocatalysis

  Kulishova, L. M. & Zharkov, D. O., 1 Feb 2017, In: Biochemistry (Moscow). 82, 2, p. 95-105 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Biocatalysis 100%
  • Gases 50%
  • Gas 31%
  • Thermodynamics 20%
  • Enzymes 18%
  5 Citations (Scopus)

• Synthesis of a series of NAD⁺ analogues, potential inhibitors of PARP 1, using ADP conjugates functionalized at the terminal phosphate group

  Sherstyuk, Y. V., Zakharenko, A. L., Kutuzov, M. M., Sukhanova, M. V., Lavrik, O. I., Silnikov, V. N. & Abramova, T. V., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 76-83 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Poly(ADP-ribose) Polymerase Inhibitors 100%
  • Nucleosides 79%
  • ADP 78%
  • NAD 77%
  • Adenosine Diphosphate 75%
  4 Citations (Scopus)

• Taxonomy of the order Mononegavirales: update 2017

  Amarasinghe, G. K., Bào, Y., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., Blasdell, K. R., Bochnowski, A., Briese, T., Bukreyev, A., Calisher, C. H., Chandran, K., Collins, P. L., Dietzgen, R. G., Dolnik, O., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Fang, Q., & 53 othersFormenty, P., Fouchier, R. A. M., Ghedin, E., Harding, R. M., Hewson, R., Higgins, C. M., Hong, J., Horie, M., James, A. P., Jiāng, D., Kobinger, G. P., Kondo, H., Kurath, G., Lamb, R. A., Lee, B., Leroy, E. M., Li, M., Maisner, A., Mühlberger, E., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Pearson, M. N., Randall, R. E., Revill, P. A., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Smither, S. J., Song, Q., Stone, D. M., Takada, A., Terregino, C., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Volchkov, V. E., Wahl-Jensen, V., Walker, P. J., Wang, B., Wang, D., Wang, F., Wang, L. F., Werren, J. H., Whitfield, A. E., Yan, Z., Ye, G. & Kuhn, J. H., 1 Aug 2017, In: Archives of Virology. 162, 8, p. 2493-2504 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Mononegavirales 100%
  • Names 52%
  • Pneumovirus 33%
  • Rhabdoviridae 28%
  • Viruses 12%
  145 Citations (Scopus)