Research Output per year
Organization profile
Profile Information
Laboratory of Computational Transcriptomics and Evolutionary Bioinformatics at the Faculty of Natural Sciences, NSU was established in partnership with Prof. Dr. Ivo Grosse lab at Martin Luther University Halle-Wittenberg (Germany) in June 2015 as part of 5-100 project. The main Lab activities are the development of computational methods for analysis of genome-wide and transcriptome sequencing data and application of these methods to various biological problems. An important goal of the Lab is to educate specialists in the field of computational transcriptomics and bioinformatics that are capable of analyzing genome-wide data, as well as developing new methods and algorithms for solving non-standard problems.
The research in is carried out in the following areas:
1) the study of the mechanisms utilized by phytohormones to regulate plant development;
2) development of “smart” computer methods and programs for Big Data analysis in biology;
3) the study of the evolution of the morphogenesis mechanisms in plants based on molecular phylogenetic analysis
Strategic academic units
- Synthetic Biology
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Network
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Profiles
Dmitriy Arkadevich Afonnikov
- Department of Natural Sciences, Computational Transcriptomics and Evolutionary Bioinformatics Laboratory - Leading Researcher
- Department of Natural Sciences, Information Biology Section - Assistant Professor
Person: Research, Academic
Nadezhda Valerevna Dmitrieva
- Department of Natural Sciences, Computational Transcriptomics and Evolutionary Bioinformatics Laboratory - Leading Engineer
Person: Research Support
Elena Vasilevna Zemlyanskaya
- Department of Natural Sciences, Information Biology Section - Assistant Lecturer
- Department of Natural Sciences, Computational Transcriptomics and Evolutionary Bioinformatics Laboratory - Head of Laboratory
Person: Research, Academic
Research Output
3D Analysis of Mitosis Distribution Pattern in the Plant Root Tip with iRoCS Toolbox
Lavrekha, V. V., Pasternak, T., Palme, K. & Mironova, V. V., 1 Jan 2020, In : Methods in molecular biology (Clifton, N.J.). 2094, p. 119-125 7 p.Research output: Contribution to journal › Article
Analysis of color and texture characteristics of cereals on digital images
Komyshev, E. G., Genaev, M. A. & Afonnikov, D. A., 1 Jan 2020, In : Vavilovskii Zhurnal Genetiki i Selektsii. 24, 4, p. 340-347 8 p.Research output: Contribution to journal › Review article
Open Access
Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data
Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 1 Sep 2020, In : International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.Research output: Contribution to journal › Article
Open Access
Press / Media
Студентка-биолог освоила передовые методы генной инженерии и микроскопического анализа на стажировке в чешском университете
Елена Вячеславовна Убогоева & Елена Васильевна Землянская
26.12.2019
1 Media contribution
Press/Media: Press / Media
Вернуть утраченное: как клетки растений реагируют на повреждения
Виктория Владимировна Миронова
08.11.2019
1 Media contribution
Press/Media: Press / Media
Новосибирские биоинформатики разработали уникальный программный комплекс
23.10.2019
1 Media contribution
Press/Media: Press / Media
Student theses
Гены Pina и Pinb аллополипоидной пшеницы как мишень для направленного мутазенеза с целью изменения текстуры зерна
Author: Фомин, И. Н., 6 Jun 2018Supervisor: Хлесткина, Е. К. (Supervisor) & Афонников, Д. А. (Supervisor)
Student thesis: Master's Thesis
Компьютерное моделирование распределения ауксина в апикальной меристеме корня Arabidopsis thaliana c учетом анатомии корневого чехлика и нарушений в его структуре
Author: Савина, М. С., 4 Dec 2019Supervisor: Миронова, В. В. (Supervisor)
Student thesis: Science thesis › Doctoral Thesis
Компьютерный анализ и моделирование процессов формирования и поддержания структуры апикальной меристемы корня Arabidopsis thaliana L.
Author: Лавреха, В. В., 22 May 2018Supervisor: Миронова, В. В. (Supervisor)
Student thesis: Science thesis › Doctoral Thesis